PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52087.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 241aa MW: 27129.7 Da PI: 6.9421

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.1e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ +G +W++ ++ g+ R++k+c++rw +yl PKA52087.1 13 KGPWSAEEDQILISHIQNYGHQNWRALPKQAGLLRCGKSCRLRWTNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	54.9	2e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l PKA52087.1 66 RGNFTKEEEETIIHLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 111 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MRSPCCEKQG LKKGPWSAEE DQILISHIQN YGHQNWRALP KQAGLLRCGK SCRLRWTNYL 60 RPDIKRGNFT KEEEETIIHL HQMLGNRWSA IAARLPGRTD NEIKNVWHTH LKKRLTSSAV 120 SSSTKFIVKS NTKKELTVAP PAQSFSGISH SGTDLSNPPT GDDSKENHIE SWDRGFQDID 180 EGLWRGTVLE MESSVLPMVS MAMEGFSSAP SSLVCDTEDD MSFWLSIFMQ SEDLQGLPGI 240 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-78	MYB family protein