PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52136.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 773aa MW: 86542.3 Da PI: 6.0434

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.4e-23	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l PKA52136.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 222 99***************************8544444..48********************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PKA52136.1 223 LLGIRRA 229 **997 PP
2	Auxin_resp	92.8	5.7e-31	254	332	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v a++seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k PKA52136.1 254 AAHAAATNSRFTV-----ACPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 332 799*******9.....5889********87599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
MKPCPAGSGQ QDEEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK 60 EVEGHIPNYP SLPPQLVCQL HNVTMHADPE TDEVYAQMTL QPLSPEEQKD SYIPIEMGVA 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDIEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTVACPS EFVIPLSKYV KAVFHTRVSV GMRFRMLFET 300 EESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM 360 YPSLFPLRLK RPWQPGLPFT HDNRVDESAA LMWLSTDARD RGLPLMNFQS GITPWIQQRF 420 EPTVLGSEHD QYQALSAAAL HDLRGDFLKQ QLLHYQQPFQ LQFQPSRPAI SQQQILQQAQ 480 PQTSFSQLHG ISETQNDLLQ QFHCEQQKHK IQNHNDNIQQ QHSPLLAQLC PTGFPDLSTN 540 YSTVQAPTFL QPTINSGNGE VGADVLNLSR LGQPIIEQNQ HLWEPRATIH HASPFGNSSF 600 PSYSDKNGSV ENEHCSADSQ KQPLFGVPRD SPGLLSSGAP NLSASSFNAD LPAEQYSIQN 660 SLYGFANDSS GLLQDSGEVD PPVRTFIKVY KSGSVGRSLD ISRFCSYNEL REELGQMFGI 720 EGELDDPLRS GWQLVFVDRE NDVLLLGDDP WEAFVNSVWY IKILSPEDVQ KMG

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

MKPCPAGSGQ QDEEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK  60
EVEGHIPNYP SLPPQLVCQL HNVTMHADPE TDEVYAQMTL QPLSPEEQKD SYIPIEMGVA  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDIEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTVACPS EFVIPLSKYV KAVFHTRVSV GMRFRMLFET  300
EESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM  360
YPSLFPLRLK RPWQPGLPFT HDNRVDESAA LMWLSTDARD RGLPLMNFQS GITPWIQQRF  420
EPTVLGSEHD QYQALSAAAL HDLRGDFLKQ QLLHYQQPFQ LQFQPSRPAI SQQQILQQAQ  480
PQTSFSQLHG ISETQNDLLQ QFHCEQQKHK IQNHNDNIQQ QHSPLLAQLC PTGFPDLSTN  540
YSTVQAPTFL QPTINSGNGE VGADVLNLSR LGQPIIEQNQ HLWEPRATIH HASPFGNSSF  600
PSYSDKNGSV ENEHCSADSQ KQPLFGVPRD SPGLLSSGAP NLSASSFNAD LPAEQYSIQN  660
SLYGFANDSS GLLQDSGEVD PPVRTFIKVY KSGSVGRSLD ISRFCSYNEL REELGQMFGI  720
EGELDDPLRS GWQLVFVDRE NDVLLLGDDP WEAFVNSVWY IKILSPEDVQ KMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein