PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52211.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 213aa MW: 24787.6 Da PI: 7.6699

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.6e-16	4	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-.HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt.lkqcksrwqky 47 rg W + Ede+l+d+v+++G+++W+ Ia++++ gR+ +k+c++rw++ PKA52211.1 4 RGHWRPSEDEKLKDLVAEYGPHNWNDIAEKLP-GRSaGKSCRLRWFNQ 50 899***************************.999459****996 PP
2	Myb_DNA-binding	57.2	3.8e-18	57	100	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ ++ +G++ W++Iar ++ gRt++ +k++w+ PKA52211.1 57 RSPFTEEEEERLLASHRIHGNR-WSLIARLFP-GRTDNAVKNHWHV 100 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MCTRGHWRPS EDEKLKDLVA EYGPHNWNDI AEKLPGRSAG KSCRLRWFNQ LDPRINRSPF 60 TEEEEERLLA SHRIHGNRWS LIARLFPGRT DNAVKNHWHV IMARRSRQRS RVKSSSSSFI 120 KEESSSTAPG NQQEGIPHEY FSFVQSLIHD GRKRLSPVEF YDFLHVNSRE SDGAKCCSRT 180 IDDDQKQEVE QDHESKKAPL QFIDFLSVNE DVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	RRSRQRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73410.1	2e-67	MYB family protein