PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52354.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 385aa MW: 41632.6 Da PI: 8.2537

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.8	2.7e-36	48	187	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.eaesssssasnsssgkaaksaak 96 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++ +++++ + ++ ++as+ + + +++++++ PKA52354.1 48 GGKDRHSKVWTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAGAAIAELPELegsfQAPPPIALpCRAKLPEKASAGELQLSNSKSTC 146 78***********************************************************997644444333433333333444444466777789 PP TCP 97 skksqksaasalnlak.esrakarararertrekmriknkl 136 s+ s++s+ s+ +l++ e r k r +re+t+e++ ++ ++ PKA52354.1 147 SSASETSKGSVMSLSRfEIRGKGRNLSREETTEEKDNRRHQ 187 99999999999*9**********888888777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEAEGIHSIK RPKIKGKDDG DADVKGAGGL LPWQNVSSRI IRVSRVSGGK DRHSKVWTAK 60 GLRDRRVRLS VSTAIQFYDL QDRLGYDQPS KAVEWLIKAA GAAIAELPEL EGSFQAPPPI 120 ALPCRAKLPE KASAGELQLS NSKSTCSSAS ETSKGSVMSL SRFEIRGKGR NLSREETTEE 180 KDNRRHQNMS ASSFTELLTA GGINNGEPIA PAADVTDCNA VLSHKLLKPP STNLPVEYFG 240 QAGTFGLPYR TLQIAPGNSS QLHFINNPYM EMGTMGFNAT AAGDQHHGVQ QFSFIQDHVT 300 PVAAMAAPIG DYDLNVSISS GFARSNRGTL QSNASHHHHM IDGINLPFFF GTTSENQFHG 360 GFNGRLHTCC NEAGRHPELK GEGKD

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEAEGIHSIK RPKIKGKDDG DADVKGAGGL LPWQNVSSRI IRVSRVSGGK DRHSKVWTAK  60
GLRDRRVRLS VSTAIQFYDL QDRLGYDQPS KAVEWLIKAA GAAIAELPEL EGSFQAPPPI  120
ALPCRAKLPE KASAGELQLS NSKSTCSSAS ETSKGSVMSL SRFEIRGKGR NLSREETTEE  180
KDNRRHQNMS ASSFTELLTA GGINNGEPIA PAADVTDCNA VLSHKLLKPP STNLPVEYFG  240
QAGTFGLPYR TLQIAPGNSS QLHFINNPYM EMGTMGFNAT AAGDQHHGVQ QFSFIQDHVT  300
PVAAMAAPIG DYDLNVSISS GFARSNRGTL QSNASHHHHM IDGINLPFFF GTTSENQFHG  360
GFNGRLHTCC NEAGRHPELK GEGKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	3e-41	TCP family protein