PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA52357.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21461.7 Da    PI: 10.3376
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA52357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF848.8e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifs tg+ly+yss
  PKA52357.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSGTGRLYDYSS 59
                8***********************************************96 PP
2K-box821.3e-2771168398
       K-box   3 kssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 k++g+s  +++++a  +q+e+a+L+++++nLq++qR+l Ge+L+ Ls+k+Lq+Le++Le sl+ +R kK+++l+++i+el +k   +++en +L kkl
  PKA52357.1  71 KAKGEShmTTASEARIWQEEAANLRQQLQNLQENQRKLTGEELSGLSVKDLQNLENRLEMSLRGVRMKKEQILKDEIQELNRKGYLVHQENLELYKKL 168
                 5555555678899999******************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSG TGRLYDYSST  60
SMKSVFDRYK KAKGESHMTT ASEARIWQEE AANLRQQLQN LQENQRKLTG EELSGLSVKD  120
LQNLENRLEM SLRGVRMKKE QILKDEIQEL NRKGYLVHQE NLELYKKLNL IQENLELYKK  180
VLNKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-81MIKC_MADS family protein