PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52361.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 441aa MW: 49669.8 Da PI: 6.294

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	16	71	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k PKA52361.1 16 KKRYHRHTPRQIQELEAMFKMCPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71 688999***********************************************998 PP
2	START	103	5e-33	160	265	101	206
XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHH CS START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwv 197 sp+vp R+f f+Ry++q + g w+i+dvS+d ++ + +++v+ +lpSg+li+++sng+sk++wveh++ +++ h+l++ lv sg+a+ga +wv PKA52361.1 160 SSPVVPsREFCFLRYCQQFEPGLWAIADVSIDFAKDTQ-LPPCVK-SRLPSGCLIREMSNGYSKIVWVEHMEIEEKKQtHQLYHDLVDSGVAFGAHRWV 256 58********************************99.8*.89*********************988766**************** PP HHTXXXXXX CS START 198 atlqrqcek 206 atlqr ce+ PKA52361.1 257 ATLQRMCER 265 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MDSGDEQDLT ESQRKKKRYH RHTPRQIQEL EAMFKMCPHP DEKQRMQLSR DLGLEPRQIK 60 FWFQNRRTQM KARPEIERPM MEQLATHAMQ ELIRLAQTDE PFWTRVGGDE REVLNLEMYD 120 RIFPRPVQQL RSPDAHVEAS RDSGDVIMNS LVLVDMFMES SPVVPSREFC FLRYCQQFEP 180 GLWAIADVSI DFAKDTQLPP CVKSRLPSGC LIREMSNGYS KIVWVEHMEI EEKKQTHQLY 240 HDLVDSGVAF GAHRWVATLQ RMCERIACLM VTGNSPGDLF LLKWDVLSYG KGVVEITRIG 300 SGQNPGNCIS LFRVRNYIMS NESMFILQES CTDSSGSLVV YASVDYTSVN IAMSGEDPSY 360 IPLLPSGFVI LPDGRPGTGS FASSSSKPMG GSSGSILTVA FQIMVSSLPS AKLNLESVAT 420 VNHLIGATVQ HIKTAMGTSD T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MDSGDEQDLT ESQRKKKRYH RHTPRQIQEL EAMFKMCPHP DEKQRMQLSR DLGLEPRQIK  60
FWFQNRRTQM KARPEIERPM MEQLATHAMQ ELIRLAQTDE PFWTRVGGDE REVLNLEMYD  120
RIFPRPVQQL RSPDAHVEAS RDSGDVIMNS LVLVDMFMES SPVVPSREFC FLRYCQQFEP  180
GLWAIADVSI DFAKDTQLPP CVKSRLPSGC LIREMSNGYS KIVWVEHMEI EEKKQTHQLY  240
HDLVDSGVAF GAHRWVATLQ RMCERIACLM VTGNSPGDLF LLKWDVLSYG KGVVEITRIG  300
SGQNPGNCIS LFRVRNYIMS NESMFILQES CTDSSGSLVV YASVDYTSVN IAMSGEDPSY  360
IPLLPSGFVI LPDGRPGTGS FASSSSKPMG GSSGSILTVA FQIMVSSLPS AKLNLESVAT  420
VNHLIGATVQ HIKTAMGTSD T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-60	HD-ZIP family protein