PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52591.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 452aa MW: 47901.9 Da PI: 6.7856

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52591.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.7e-16	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk+ G g+W+++ + g+ R++k+c++rw ++l PKA52591.1 35 KGPWTSAEDAILIEYVKKNGEGNWNAVQKNSGLQRCGKSCRLRWANHL 82 79******************************************9986 PP
2	Myb_DNA-binding	46.8	6.8e-15	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ PKA52591.1 88 KGSFSPQEEMLILHLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 131 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MRAPGSVKEE SGSDISAVVN GGGVGGGAGQ QGLKKGPWTS AEDAILIEYV KKNGEGNWNA 60 VQKNSGLQRC GKSCRLRWAN HLRPNLKKGS FSPQEEMLIL HLHAQLGNKW ARMAAQLPGR 120 TDNEIKNYWN TRIKRRQRAG LPLYPPEIQH QMALRNQMQA SASSGITPPL LAQATQAPST 180 APVSSSSLSL FNSASLSPAA TPMPLYSTNP FGAKNFSFQF PLTPVTQTAA AALFPNTLSP 240 VSAAVASQQL QYGMGNFELS PPPPPLHSPS YSMKMELPSS QLFPESGGGQ LSLGQGNSGL 300 LDALLQESHG VGNLVKDGSL LEPLPIASGG RSGDPLCMFR DSEFSIAIQV KRESPESVPP 360 AVTAANHDIS TLLDIIPAHS ASPAPATSSS ALPDWCKNCD SAGEFSNGPS SVVTDDDLRL 420 EMQQLASTLS PAPVEHDWGL GSYSWDNMPS IC

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MRAPGSVKEE SGSDISAVVN GGGVGGGAGQ QGLKKGPWTS AEDAILIEYV KKNGEGNWNA  60
VQKNSGLQRC GKSCRLRWAN HLRPNLKKGS FSPQEEMLIL HLHAQLGNKW ARMAAQLPGR  120
TDNEIKNYWN TRIKRRQRAG LPLYPPEIQH QMALRNQMQA SASSGITPPL LAQATQAPST  180
APVSSSSLSL FNSASLSPAA TPMPLYSTNP FGAKNFSFQF PLTPVTQTAA AALFPNTLSP  240
VSAAVASQQL QYGMGNFELS PPPPPLHSPS YSMKMELPSS QLFPESGGGQ LSLGQGNSGL  300
LDALLQESHG VGNLVKDGSL LEPLPIASGG RSGDPLCMFR DSEFSIAIQV KRESPESVPP  360
AVTAANHDIS TLLDIIPAHS ASPAPATSSS ALPDWCKNCD SAGEFSNGPS SVVTDDDLRL  420
EMQQLASTLS PAPVEHDWGL GSYSWDNMPS IC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	4e-72	MYB family protein