PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52635.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 698aa MW: 80421.6 Da PI: 7.5168

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1e-23	66	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk+ GFsvrk + +++ ++g+i +r++ Cs+eg+r+e++++ ++++ra +rt+C a+++ k ++d+ w ++k eHnH la PKA52635.1 66 NFYNSYAKRKGFSVRKGHLSRR-KDGSIRDRHYLCSNEGTRQEHRTH--VTKKPRALERTNCLARIEFKVSRDNIWTISKYIDEHNHLLA 152 6***************9997.8899************9887..999*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MKETASRENA TSNASELSRQ VEAQTCTFVS KEEKSTDGSF SQEVLNSPQS EPKVGLVFHS 60 EEQAYNFYNS YAKRKGFSVR KGHLSRRKDG SIRDRHYLCS NEGTRQEHRT HVTKKPRALE 120 RTNCLARIEF KVSRDNIWTI SKYIDEHNHL LASPNKIHML RSHRAKVPPH RAFINESDYV 180 GIKPVQTCAL AEKLHDAESS VLLYKSQNYY LLQSNRTRDL EKGDLQFLLD FLKSKQSEDP 240 TFCYAVQLDE KDRPTNFFWT DARSIFDYSC FGDSVLFDTT YRASSYDIPF APFIGINHHK 300 QVIIFGAALI LDESMESFTW LFRTFLAAMS GKQPKTIFTD QCSALSRAIS MSMPETFHQL 360 CLWHVLVNAP KIVPHVFSRE PSFEKDFEKC LFESCSEAEL CKAWEHLISK YNLMNISWLE 420 DLYAAREMWS YVYCKNSFNA TMTTKEWRET VDNNFKMLFY RKLPPPKFMV QYHRALSHLR 480 EKEFSEDCES VLSKAVLLAD IPTLMEAAEL YTRVIYKDFE EEYKSQLACL CEPVGIEGNV 540 YTFKVSIPHK RSLGLVEFDS SNVSVTCSCK KFELMGILCM HALKVLNYNN ILQLPSRYIL 600 KRWTKYAKDG VTSSDRQPSS LDQGISDFSF SRVIRKAMTV VVKSAFSKDA LNLVERMLDG 660 CMAETESTVP NISSDKLDEV IMVNNVQQNA AEGNNHLF

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MKETASRENA TSNASELSRQ VEAQTCTFVS KEEKSTDGSF SQEVLNSPQS EPKVGLVFHS  60
EEQAYNFYNS YAKRKGFSVR KGHLSRRKDG SIRDRHYLCS NEGTRQEHRT HVTKKPRALE  120
RTNCLARIEF KVSRDNIWTI SKYIDEHNHL LASPNKIHML RSHRAKVPPH RAFINESDYV  180
GIKPVQTCAL AEKLHDAESS VLLYKSQNYY LLQSNRTRDL EKGDLQFLLD FLKSKQSEDP  240
TFCYAVQLDE KDRPTNFFWT DARSIFDYSC FGDSVLFDTT YRASSYDIPF APFIGINHHK  300
QVIIFGAALI LDESMESFTW LFRTFLAAMS GKQPKTIFTD QCSALSRAIS MSMPETFHQL  360
CLWHVLVNAP KIVPHVFSRE PSFEKDFEKC LFESCSEAEL CKAWEHLISK YNLMNISWLE  420
DLYAAREMWS YVYCKNSFNA TMTTKEWRET VDNNFKMLFY RKLPPPKFMV QYHRALSHLR  480
EKEFSEDCES VLSKAVLLAD IPTLMEAAEL YTRVIYKDFE EEYKSQLACL CEPVGIEGNV  540
YTFKVSIPHK RSLGLVEFDS SNVSVTCSCK KFELMGILCM HALKVLNYNN ILQLPSRYIL  600
KRWTKYAKDG VTSSDRQPSS LDQGISDFSF SRVIRKAMTV VVKSAFSKDA LNLVERMLDG  660
CMAETESTVP NISSDKLDEV IMVNNVQQNA AEGNNHLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-126	FAR1 family protein