PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52788.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 222aa MW: 23753.1 Da PI: 8.5808

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00083	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PKA52788.1 80 YECKTCSKCFPSFQALGGHRASH 102 99**********99999998887 PP
2	zf-C2H2	11.5	0.00094	136	156	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg F++ L H+r+H PKA52788.1 136 CSVCGLEFPSGQALGGHMRRH 156 ********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MEAAHEEPMG SYTTTSTCDS PSPVVLKRRR TIRHRAVAVA SPASSVELSG MTEDEDDDLA 60 ANCLILLAQG RDLEAASEFY ECKTCSKCFP SFQALGGHRA SHKKPKQASQ WQPSLPSSYL 120 VHGGGSGGGK QRIHGCSVCG LEFPSGQALG GHMRRHRPAI LPEVSGKKKE KKKKQKKNVL 180 SLDLNLPAPS DDVDPFAMAG LPLSFSSAPP QPPPPPLVGC HY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-30	C2H2 family protein