PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52824.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 396aa MW: 42484.5 Da PI: 6.9287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.5e-08	219	266	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++ Lq PKA52824.1 219 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQLLQ 266 8*************************9....566677777777777777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MEPARSGAGS GKSGTYTPEI AETLRFEEEI QSLMGTTLIH HGFECSPPAN AGGSSFTALL 60 GLPPSQAVEL LHDPESGTSR SIAAGFRLAD PKSLQLPLVC SPTFPSNATL VERAARFSVF 120 AAAEESPEAS SAAVPSISGG DHSPKPKSEP QDSDSPLPIE KQQQRPAKRK EAERSSKAKA 180 PAKKSKSVAG GDDGSPGKPD GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE 240 LVPGCSKISG TALVLDEIIN HVQLLQRQVE LLSMRLAAVN PRIDFTGLDN LFSAESGRVT 300 VAGNGLSWMD GGSNAVMRRN PHGELQEMWH VDLLMPHHHH QQQTPGWERD DSQQQQHHVF 360 ISNSSSCSPP GTSLFGYDSA ASAALPQLSN QLKSEL

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MEPARSGAGS GKSGTYTPEI AETLRFEEEI QSLMGTTLIH HGFECSPPAN AGGSSFTALL  60
GLPPSQAVEL LHDPESGTSR SIAAGFRLAD PKSLQLPLVC SPTFPSNATL VERAARFSVF  120
AAAEESPEAS SAAVPSISGG DHSPKPKSEP QDSDSPLPIE KQQQRPAKRK EAERSSKAKA  180
PAKKSKSVAG GDDGSPGKPD GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE  240
LVPGCSKISG TALVLDEIIN HVQLLQRQVE LLSMRLAAVN PRIDFTGLDN LFSAESGRVT  300
VAGNGLSWMD GGSNAVMRRN PHGELQEMWH VDLLMPHHHH QQQTPGWERD DSQQQQHHVF  360
ISNSSSCSPP GTSLFGYDSA ASAALPQLSN QLKSEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	4e-67	bHLH family protein