PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52863.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 248aa MW: 27413.2 Da PI: 10.0836

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.9	8.5e-16	37	119	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ vl L+e++++++ +r+klk+++We+++ ++ ++ + ++p qCk+k+e+l+kry+ +++ ++ ++++f +++ PKA52863.1 37 EWSEDGVLSLLEVYESKWLLRNRAKLKGADWEDIAGHVsrrsSASKAFKTPSQCKNKIESLKKRYRSEAAAGSS-------SWQFFARMD 119 5***********************************77666666778***************99887765.......599999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MIFSSASALC NSMDSASHGH GPGESQALAP AVTKRDEWSE DGVLSLLEVY ESKWLLRNRA 60 KLKGADWEDI AGHVSRRSSA SKAFKTPSQC KNKIESLKKR YRSEAAAGSS SWQFFARMDG 120 LLKGDAAAGK GNGIKLPAPA EKAEEGDGDP DKASNTSPEV AGERKRVVKR RKGLGGEVAD 180 SISLLADSML KMEQARMDTW KEWEKIRIEM EVKKKEMELR RTEIVAHTQL EIAKLLVQIW 240 RGRNNGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	171	RVVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-34	Trihelix family protein