PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52951.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 672aa MW: 77236.7 Da PI: 7.7961

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.3	1.2e-14	39	75	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cg+ Tp++Rrgp+g++tLCnaCGl +rk+ l PKA52951.1 39 CTRCGVGAksTPHMRRGPEGPRTLCNACGLAWRKRSL 75 9999865445************************875 PP
2	FAR1	84.6	1.6e-26	109	195	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrk k+ ++++ +rt+vCs+eg+r+e+k ++++r+r+etr+gC a++k+k++ g+++vtk++ eH+He PKA52951.1 109 EFYNTYAGMAGFSVRKGWLDKKISDKTTRSRTLVCSREGFRQERKGG-NEAKRPRPETRIGCPARMKIKLTPAGRYRVTKFVAEHSHE 195 6*****************************************999.9************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MLIPGEIDGA NSDPEIHYEE ENEHRGDGGG DVAEELRRCT RCGVGAKSTP HMRRGPEGPR 60 TLCNACGLAW RKRSLKKFNY FDAAGGGAAG EEMVPEVGME FENEDKAYEF YNTYAGMAGF 120 SVRKGWLDKK ISDKTTRSRT LVCSREGFRQ ERKGGNEAKR PRPETRIGCP ARMKIKLTPA 180 GRYRVTKFVA EHSHEPAPPS TKHMLRSQRV TTEFQTEEAD LSDDVGGVSA RSCEATATRQ 240 GAKQSSRDIF LLPSDYKICL PSKRMKSLQT GDTEALLKYL QSMQLQDASF FYAIQLDEDD 300 KLTNIFWADS KSQEDFNYFG DIVCFDTTYK FNTYCRPFAL FIGVNHHKQI TTFGAAFLYD 360 ETVESFKWLF NTFRIAMRGK LAKTILTDES PEISNALAMV WPETIHRLCA WQIFHSSMKH 420 LNHIFQSSKT FSKDFSRCVY SFEDENEFIL GWRALLEKYD LISNEWISKL FECRERWALA 480 YDRLTFCADI KSTLQNESLS SELKKFCCPQ HDLFSFFKNY EKVLSEYRYA ELQADFHASQ 540 SFPRIPPSKM LRQAASMYTP AVFEIFRKEF EVFMDCMLYN SGEYGTITEY RITVGEKSKE 600 YYVRFDSFDC SVACSCKKFE FMGIHCGHVI KVLDVRNIKV LPERYYLKRW KRDAKAAIDA 660 QPKSPAASSG FS

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MLIPGEIDGA NSDPEIHYEE ENEHRGDGGG DVAEELRRCT RCGVGAKSTP HMRRGPEGPR  60
TLCNACGLAW RKRSLKKFNY FDAAGGGAAG EEMVPEVGME FENEDKAYEF YNTYAGMAGF  120
SVRKGWLDKK ISDKTTRSRT LVCSREGFRQ ERKGGNEAKR PRPETRIGCP ARMKIKLTPA  180
GRYRVTKFVA EHSHEPAPPS TKHMLRSQRV TTEFQTEEAD LSDDVGGVSA RSCEATATRQ  240
GAKQSSRDIF LLPSDYKICL PSKRMKSLQT GDTEALLKYL QSMQLQDASF FYAIQLDEDD  300
KLTNIFWADS KSQEDFNYFG DIVCFDTTYK FNTYCRPFAL FIGVNHHKQI TTFGAAFLYD  360
ETVESFKWLF NTFRIAMRGK LAKTILTDES PEISNALAMV WPETIHRLCA WQIFHSSMKH  420
LNHIFQSSKT FSKDFSRCVY SFEDENEFIL GWRALLEKYD LISNEWISKL FECRERWALA  480
YDRLTFCADI KSTLQNESLS SELKKFCCPQ HDLFSFFKNY EKVLSEYRYA ELQADFHASQ  540
SFPRIPPSKM LRQAASMYTP AVFEIFRKEF EVFMDCMLYN SGEYGTITEY RITVGEKSKE  600
YYVRFDSFDC SVACSCKKFE FMGIHCGHVI KVLDVRNIKV LPERYYLKRW KRDAKAAIDA  660
QPKSPAASSG FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1 family protein