PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53096.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 347aa MW: 35885.9 Da PI: 8.5101

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.2	4.3e-36	101	205	7	115
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksa 104 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++ +++ + ++ ++++ + + + s+ PKA53096.1 101 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIATtVNGTLKIPTQ-----TSMPAPPAMSAAGGSS 194 89*********************************************************8888844422222222222.....2333333333444444 PP TCP 105 asalnlakesr 115 s ++ak+ r PKA53096.1 195 GSGDDFAKKRR 205 44444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MQHLQQGFRF SPFSALQLTE GEDQGEICRE LASEMDSTNE ENEEISGISG DGRSGKGVAG 60 DVRERSAPSS NVSVRNRLIM PKPEPIEMMA ALPIVRRPIG RTKDRHTKVE GRGRRIRMPA 120 ACAARIFQLT RELGHKSDGE TIRWLLQHAE PAIIAATGTG TVPAIATTVN GTLKIPTQTS 180 MPAPPAMSAA GGSSGSGDDF AKKRRKKLQP MRAVAGGGVI GYCSGSDPLL SAGLAPVGAP 240 GMVPVWTVGG GVAGSVLPPG AVWMFSSSTA IMGGPSSQAQ IWTLPPGSQV VNLAMARPVT 300 VAGVFSGGVP EVSPAANTAG NAAAAQGDLE LQLLETKDGA QHGEISI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MQHLQQGFRF SPFSALQLTE GEDQGEICRE LASEMDSTNE ENEEISGISG DGRSGKGVAG  60
DVRERSAPSS NVSVRNRLIM PKPEPIEMMA ALPIVRRPIG RTKDRHTKVE GRGRRIRMPA  120
ACAARIFQLT RELGHKSDGE TIRWLLQHAE PAIIAATGTG TVPAIATTVN GTLKIPTQTS  180
MPAPPAMSAA GGSSGSGDDF AKKRRKKLQP MRAVAGGGVI GYCSGSDPLL SAGLAPVGAP  240
GMVPVWTVGG GVAGSVLPPG AVWMFSSSTA IMGGPSSQAQ IWTLPPGSQV VNLAMARPVT  300
VAGVFSGGVP EVSPAANTAG NAAAAQGDLE LQLLETKDGA QHGEISI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	206	KKRRK
2	202	207	KKRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-47	TCP family protein