PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53109.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 754aa MW: 83761.7 Da PI: 7.668

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	123	147	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C++G++C+F+H+ PKA53109.1 123 ICPEVAKSGnvdACRFGGSCRFNHD 147 59999999999***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MDAAIAAEVS QPSAPDDGVP AVAEHLHPSP PLPRIQHRSP ENLVAKAIAP VKVEYLRPPP 60 LRTVPNSEVE DGAHDGAAER KAAPGLVKEK KSKRQLKKER KQVDVEKPVS FFFFNERKSA 120 LHICPEVAKS GNVDACRFGG SCRFNHDLEA FMAQKPADLE GICPFVMIEE LCPYGITCRY 180 MNTHKKHIPL SNPDILRKSF EVNTLNKDLQ KLLWKNEGSF PVANAQLKAL GLKEGKSRVA 240 NSGNGQLDSH QDISNGSDGL QVDDSSDACC ISGNEKLFPP CKTVKEERLG DASVINVCRP 300 LKKVKYEDHD NIEVLCTSES SNGEKKIAFA TAQNRQEVAL SISMCSTKAD FSSKSQAREK 360 KLIDFRGKLY LAPLTTVGNL PFRRVCKALG ADITCGEMAV CSNLLQGQAS EWALLRRHSS 420 EDIFGVQICG AYPDTVARTV ELIDQQCTVD FIDINMGCPI DVIVNKGAGS SLLMKPMRMK 480 GIIQVASGTT ERPLTIKARS GFFEGRNQID SLISNIYLWG ANAVTVHGRS RQQRYSKLAD 540 WNYIYQCAGK APSGLQFLGN GDIFSYCDYN KHISDCPQLS TCMIARGALL KPWIFTEIKE 600 QRHWDISSGE RLNILKDFVN FGLEHWGSDT KGKWEHLESQ APMKDTSFAL LYGKFSGYIP 660 SLQLLGVETT RHFLLEWLSY THRYIPTGLL DVIPQCLNWR PPSYFGRDDL ETIMASDCAA 720 DWIRISEMLL GKVPEGFTFA PKHKSNAYDH AENG

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MDAAIAAEVS QPSAPDDGVP AVAEHLHPSP PLPRIQHRSP ENLVAKAIAP VKVEYLRPPP  60
LRTVPNSEVE DGAHDGAAER KAAPGLVKEK KSKRQLKKER KQVDVEKPVS FFFFNERKSA  120
LHICPEVAKS GNVDACRFGG SCRFNHDLEA FMAQKPADLE GICPFVMIEE LCPYGITCRY  180
MNTHKKHIPL SNPDILRKSF EVNTLNKDLQ KLLWKNEGSF PVANAQLKAL GLKEGKSRVA  240
NSGNGQLDSH QDISNGSDGL QVDDSSDACC ISGNEKLFPP CKTVKEERLG DASVINVCRP  300
LKKVKYEDHD NIEVLCTSES SNGEKKIAFA TAQNRQEVAL SISMCSTKAD FSSKSQAREK  360
KLIDFRGKLY LAPLTTVGNL PFRRVCKALG ADITCGEMAV CSNLLQGQAS EWALLRRHSS  420
EDIFGVQICG AYPDTVARTV ELIDQQCTVD FIDINMGCPI DVIVNKGAGS SLLMKPMRMK  480
GIIQVASGTT ERPLTIKARS GFFEGRNQID SLISNIYLWG ANAVTVHGRS RQQRYSKLAD  540
WNYIYQCAGK APSGLQFLGN GDIFSYCDYN KHISDCPQLS TCMIARGALL KPWIFTEIKE  600
QRHWDISSGE RLNILKDFVN FGLEHWGSDT KGKWEHLESQ APMKDTSFAL LYGKFSGYIP  660
SLQLLGVETT RHFLLEWLSY THRYIPTGLL DVIPQCLNWR PPSYFGRDDL ETIMASDCAA  720
DWIRISEMLL GKVPEGFTFA PKHKSNAYDH AENG