PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53140.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 309aa    MW: 33471.8 Da    PI: 6.4102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.6e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G g+W++ +r  g++R++k+c++rw +yl
       PKA53140.1 14 KGPWTPEEDQKLIQYIQKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.98.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
       PKA53140.1  67 RGKFSSDEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGRSPCCDEN GLKKGPWTPE EDQKLIQYIQ KHGHGSWRAL PRLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SSDEEQTILN LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKRLIQMG  120
FDPMTHRPRT DFFAALPHLL ALASLLDQHP ATLLDGLNAE ATRLQCLQYI LNSATAFGGG  180
GSSTAGGHAA DSLNVLPNPQ TFPSPIASFS TPGDTINLPE LQIPLSFDTV SFDLISNETS  240
SFSLLSPGDG TTPPLMVSPT SALPPLADLS NQGDACSTSS CGGSGNCSTP AASFWPDLLF  300
DDPFIPEFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-91MYB family protein