PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53464.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB_related
Protein Properties Length: 227aa    MW: 26013 Da    PI: 5.9169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+  +eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
       PKA53464.1 10 RGNIGPEEEDLIIRLHCLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                     677889****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MNYLRPDIKR GNIGPEEEDL IIRLHCLLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKKLK  60
KHGFIPREET QRFKRSESSR KKKMTKIDNS NISTKQSAHE TAASDVDHDS KIYAPKPTRF  120
TPRLVRNCSV VESSEELGFD HGRLGMTGGP AAEEEKLSPA GSTHDDLLYF SALSDNAGEE  180
AENINLFDQQ QIDFPINDTV FERLFYEYSQ LLQAEVDFGQ MNDQFVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-31MYB family protein