PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53520.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 243aa    MW: 26625.6 Da    PI: 8.6047
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-211963145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                krie++  rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk
  PKA53520.1 19 KRIESEEARQVCFSKRRSGLFKKATELSILCGAEIGIVVFSPAGK 63
                79*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MMTVRKKRQS MGRQKIPMKR IESEEARQVC FSKRRSGLFK KATELSILCG AEIGIVVFSP  60
AGKPFSFGHP SLDYIIKRFA GGDGTRGMGP MGAAQGIDYG ALQELNINHA RLTEELEEQR  120
RRKEVLEAAI EALRCGDHRR ALPWEADVHE MGIEELESFQ RALEVLWRSV ASRREEIEIM  180
MEVETKAAVA AAAAAAATPM AYGGGGYVGG CNGLYLTPPS LLPGGGVAGG FYSRGLERPY  240
FWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-34M-type_MADS family protein