PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53567.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 395aa MW: 42952.6 Da PI: 7.3442

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.9	1.1e-35	47	182	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec....eaesssssasnsssg...k 89 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai +l+++ +s+++ + + + a++s+++ PKA53567.1 47 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLINAAAAAIADLPELdvsfTSPTP--MalarK---LPERAAASEADgwqP 140 689*************************************************************775422222..232321...222222222224535 PP TCP 90 aaksaakskksqksaasalnlak.esrakarararertrekm 130 +++++++s+ s++s+ s+l+l++ es+ ka+ + +++ek+ PKA53567.1 141 SQSKSTCSSTSETSKGSVLSLSRcESQVKANRERTSEDEEKN 182 666666999999999999999998888777655333444433 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MEAEEIQSSK PPRGRKDDEV DENGGCGGEP RQLQNASSRI FRVSRASGGK DRHSKVLTAK 60 GLRDRRVRLS VSTAIQFYDL QDRLGYDQPS KAVEWLINAA AAAIADLPEL DVSFTSPTPM 120 ALARKLPERA AASEADGWQP SQSKSTCSST SETSKGSVLS LSRCESQVKA NRERTSEDEE 180 KNRDVAHHHH HYHVKTQSYS KLLSVGTGPN IGTDTSAVEP VDCSSASFRQ KQLRPLQQSL 240 PATPMADYFG HAHKGLQLMP TYSSLLHFGN SPHMGLGNSL VSPSREHEDL QQFSFMHDQV 300 IPVAAMPGGD HNLNVPASSG IPGYRRGTLQ SNSLHHHQLT DGANLPFFFG STLPVVSAAG 360 ASMDNQFAEA SNGRLHFCYS DGQKHPDMKL GEGKS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MEAEEIQSSK PPRGRKDDEV DENGGCGGEP RQLQNASSRI FRVSRASGGK DRHSKVLTAK  60
GLRDRRVRLS VSTAIQFYDL QDRLGYDQPS KAVEWLINAA AAAIADLPEL DVSFTSPTPM  120
ALARKLPERA AASEADGWQP SQSKSTCSST SETSKGSVLS LSRCESQVKA NRERTSEDEE  180
KNRDVAHHHH HYHVKTQSYS KLLSVGTGPN IGTDTSAVEP VDCSSASFRQ KQLRPLQQSL  240
PATPMADYFG HAHKGLQLMP TYSSLLHFGN SPHMGLGNSL VSPSREHEDL QQFSFMHDQV  300
IPVAAMPGGD HNLNVPASSG IPGYRRGTLQ SNSLHHHQLT DGANLPFFFG STLPVVSAAG  360
ASMDNQFAEA SNGRLHFCYS DGQKHPDMKL GEGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	1e-38	TCP family protein