PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53599.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

NF-X1

Protein Properties

Length: 1075aa MW: 115050 Da PI: 7.9835

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17.4	9.7e-06	273	292	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H+C + CH+G C++C++ PKA53599.1 273 CGRHRCLRSCHTGACGSCQE 292 ******************85 PP
2	zf-NF-X1	18.4	4.6e-06	493	510	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+Cq lCH G CppC PKA53599.1 493 CGNHSCQLLCHSGHCPPC 510 ****************** PP
3	zf-NF-X1	19.1	2.8e-06	603	618	1	16
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG+H C ++CH+ pC+ PKA53599.1 603 CGIHACARTCHPSPCD 618 ***************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MSSSSGRHRS HGAAASAPSA VPSRQEWVPR GSTGPSAGPV HQSDPPRRPR GPRRSSSNRP 60 APESESPADP VSVPQLVQEI QDKLARGAVE CMICYDMVRR SAPIWSCPAC FSIFHLHCIR 120 KWARSPTSAA DPTPAGGATA VPSGDWRCPG CQSPQSTAAR DLVYTCFCTR RRDPPNDLYL 180 TPHSCGEPCG KPLDRAPLHS SDGGGKGSAE GEGEDLRCPH VCVLQCHPGP CPPCKAFATR 240 RPCPCGKTVI VRRCSDRRGS LSCGQPCNRV LPCGRHRCLR SCHTGACGSC QELITASCFC 300 GNQTETVLCG DMAVKGDFKE NVGLFSCHDL CGRSLSCGNH LCKESCHPGP CGGCELQPGK 360 VKTCHCGKKK LTEERKSCLD PIPTCSEVCG KALVCRTHFC MMKCHEGECP PCSILVEQRC 420 RCGSSRRTVE CYQLFDENFS FNCEKTCGRK KNCGRHRCSE RCCPLSAASG DQLCAGHWDP 480 HICSVPCGKR LRCGNHSCQL LCHSGHCPPC METIFSDLTC ACGRTSIPPP IPCGMTAPSC 540 PHPCSLPQAC GHLASHACHF GDCPLCTVPG KKECVGGHVT LRNIPCGSKD IRCNQLCGKT 600 RQCGIHACAR TCHPSPCDSS SPSESAAKNS CGQVCGAPRR DCKHTCAAPC HPSLACPEQR 660 CEFPVTISCS CGRLSAAVPC SAGASSFSSD ALIEASVTQR LPFPLQPVDP SGKKLHLGQR 720 KLACDEECEK AARKRQLAEA FDVTPPNLDG LHFGESSAAS EALSDLMRRE PKWVLAVEER 780 FKFMVLGKSK TNAGSSMKVH VFSHMPKENR DAVRQIAERW KLSVQSAGWE PKRFVAVHVT 840 PKSKPPARIL GSKPGVPAIA SQPPTFDPLI DMDPRLVVAM LDLPRDADIS ALVLRFGGEC 900 ELVWLNDKNA LAVFSDPVRA ATALRRLDHG SAYQGAVATP QSTGLPAPAG RSACSNPWKR 960 AVAPETDSWG SGWASGKEAA GSAWKENEAR PISAMANRWN VLDDDVALES ASDQEGSRLP 1020 AEGDSTTEAA GVETAIGDVG AGQEVDDWEE ASFSSSSGRL ENQAWHTKVK GVRPP

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MSSSSGRHRS HGAAASAPSA VPSRQEWVPR GSTGPSAGPV HQSDPPRRPR GPRRSSSNRP  60
APESESPADP VSVPQLVQEI QDKLARGAVE CMICYDMVRR SAPIWSCPAC FSIFHLHCIR  120
KWARSPTSAA DPTPAGGATA VPSGDWRCPG CQSPQSTAAR DLVYTCFCTR RRDPPNDLYL  180
TPHSCGEPCG KPLDRAPLHS SDGGGKGSAE GEGEDLRCPH VCVLQCHPGP CPPCKAFATR  240
RPCPCGKTVI VRRCSDRRGS LSCGQPCNRV LPCGRHRCLR SCHTGACGSC QELITASCFC  300
GNQTETVLCG DMAVKGDFKE NVGLFSCHDL CGRSLSCGNH LCKESCHPGP CGGCELQPGK  360
VKTCHCGKKK LTEERKSCLD PIPTCSEVCG KALVCRTHFC MMKCHEGECP PCSILVEQRC  420
RCGSSRRTVE CYQLFDENFS FNCEKTCGRK KNCGRHRCSE RCCPLSAASG DQLCAGHWDP  480
HICSVPCGKR LRCGNHSCQL LCHSGHCPPC METIFSDLTC ACGRTSIPPP IPCGMTAPSC  540
PHPCSLPQAC GHLASHACHF GDCPLCTVPG KKECVGGHVT LRNIPCGSKD IRCNQLCGKT  600
RQCGIHACAR TCHPSPCDSS SPSESAAKNS CGQVCGAPRR DCKHTCAAPC HPSLACPEQR  660
CEFPVTISCS CGRLSAAVPC SAGASSFSSD ALIEASVTQR LPFPLQPVDP SGKKLHLGQR  720
KLACDEECEK AARKRQLAEA FDVTPPNLDG LHFGESSAAS EALSDLMRRE PKWVLAVEER  780
FKFMVLGKSK TNAGSSMKVH VFSHMPKENR DAVRQIAERW KLSVQSAGWE PKRFVAVHVT  840
PKSKPPARIL GSKPGVPAIA SQPPTFDPLI DMDPRLVVAM LDLPRDADIS ALVLRFGGEC  900
ELVWLNDKNA LAVFSDPVRA ATALRRLDHG SAYQGAVATP QSTGLPAPAG RSACSNPWKR  960
AVAPETDSWG SGWASGKEAA GSAWKENEAR PISAMANRWN VLDDDVALES ASDQEGSRLP  1020
AEGDSTTEAA GVETAIGDVG AGQEVDDWEE ASFSSSSGRL ENQAWHTKVK GVRPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein