PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53724.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 113aa    MW: 12966.1 Da    PI: 10.0662
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n+  rqvtfskRr+g+lKKA+ELS+LCdaev +i+fs  g+lye++s
  PKA53724.1 10 RIDNSASRQVTFSKRRTGLLKKAKELSILCDAEVGLIVFSGAGRLYEFAS 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MGRGKIAIRR IDNSASRQVT FSKRRTGLLK KAKELSILCD AEVGLIVFSG AGRLYEFASS  60
RFVILPRSHS PTSPSLSLSL SLSLSLSIYI YIYIYTYNIY FYSIYTYYIY IYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-31MIKC_MADS family protein