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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PKA53905.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 250aa MW: 28399.5 Da PI: 9.9314 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 30.1 | 8.5e-10 | 88 | 135 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L+ l+P + +k + Ka++L + ++Y++sLq
PKA53905.1 88 SHSLAERVRREKISEKMKVLQGLVPGC----DKVVGKASVLDEIINYVQSLQ 135
8*************************9....555*****************9 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 250 aa Download sequence |
MNRRMTSSST SFHLYPEPFT EARSSRRSST SNADSFMERS RWKKKKKKKP IDEKKKKKKK 60 GKKKQMEEEE PPAGYIHVRA KRGQATDSHS LAERVRREKI SEKMKVLQGL VPGCDKVVGK 120 ASVLDEIINY VQSLQNQVEF LSMKLACFSP MLFNFSVDYG HPVTQIEYIE GVDSVPNEQQ 180 PFLSSFFNNE SMGNSASLLQ GQLPISFSQE NGSILMQMSD QKQGILNHLN SAQQLLLLSD 240 LMNKEILDGC |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 43 | 49 | KKKKKKK |
| 2 | 43 | 55 | KKKKKKKPIDEKK |
| 3 | 43 | 60 | KKKKKKKPIDEKKKKKKK |
| 4 | 43 | 64 | KKKKKKKPIDEKKKKKKKGKKK |
| 5 | 44 | 56 | KKKKKKKPIDEKK |
| 6 | 44 | 61 | KKKKKKKPIDEKKKKKKK |
| 7 | 44 | 65 | KKKKKKKPIDEKKKKKKKGKKK |
| 8 | 45 | 57 | KKKKKKKPIDEKK |
| 9 | 45 | 62 | KKKKKKKPIDEKKKKKKK |
| 10 | 45 | 66 | KKKKKKKPIDEKKKKKKKGKKK |
| 11 | 46 | 63 | KKKKKKKPIDEKKKKKKK |
| 12 | 46 | 67 | KKKKKKKPIDEKKKKKKKGKKK |
| 13 | 47 | 68 | KKKKKKKPIDEKKKKKKKGKKK |
| 14 | 48 | 69 | KKKKKKKPIDEKKKKKKKGKKK |
| 15 | 54 | 60 | KKKKKKK |
| 16 | 54 | 66 | KKKKKKKPIDEKK |
| 17 | 55 | 63 | KKKKKKGKK |
| 18 | 55 | 67 | KKKKKKKPIDEKK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G50915.2 | 1e-46 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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