PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53982.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 433aa    MW: 46883.2 Da    PI: 7.5964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08112131626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ ++ +G C+yGd+C+F H+
  PKA53982.1 112 CN-YFIGGSCSYGDNCRFLHS 131
                 55.9999*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MDIETAGRFG NKRIHHRGGP SQAAPDQANN KVCFHWRAGR CNRFPCPFLH SEPNTDGGGN  60
AKRAVTSDDR GFVWRNPNTS GISGPASRWG KGRGGGASGV SRPQRKVPDK VCNYFIGGSC  120
SYGDNCRFLH SWFISDSLSL LTPLQGHQKV VTGIALSAGS DKLYTGSKDE SVRVWDCQTG  180
QCVGVINLGG EVGCMIGEGP WIFVGVPNAI KAWNTQTSTD LSLSGPIGQV YAMAVGNEML  240
FAGTQDGRIL AWKFIAVGNC FEPAASLVGH RLAVVSLVVG AMRLYSGAMD HTIRVWDLST  300
LQCIQTLTDH TSVVMSVLCW DQFLLSCSLD HTVKVWVATE SGNLEVTYTH NEEHGVLAMC  360
GMPDAQNKPV LFCSCNDNTL RLYDLPSFSE RGKIFAKEEV RAIQIGPGGL FFTGDGTGDI  420
KVWKWLISEN QAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein