PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA54226.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 179aa    MW: 19928.5 Da    PI: 5.1858
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA54226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-17957149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien+  r v+fskRr g++ KA+ L +LC++++av++fs+ g+ y +
  PKA54226.1  9 KKIENEDARLVSFSKRRSGLFNKASCLTTLCGVDAAVVVFSPAGTPYSF 57
                68******************************************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MGRQKIEIKK IENEDARLVS FSKRRSGLFN KASCLTTLCG VDAAVVVFSP AGTPYSFGSP  60
RVEMVVDRFL SSGREMEEPN FFRQHHATSV QELNRRCMEL ENQVEAAQAR RRALEERLSA  120
VAAVRDEPEE MEVEELEALK EALNQLKKMT DEHMKERAAG SSSSAAQNEA GPSTPLDLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-24M-type_MADS family protein