PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54232.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 26739.1 Da PI: 8.1257

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.9e-18	96	150	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F++++ ++ +++ LAk+l+L rqV vWFqNrRa+ k PKA54232.1 96 RKKLRLTKEQSALLEDRFKEHSSLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 150 788899***********************************************98 PP
2	HD-ZIP_I/II	120.8	7.1e-39	96	185	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLE+ F+e++ L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r +++l++en+rL++e +eL+ +l PKA54232.1 96 RKKLRLTKEQSALLEDRFKEHSSLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLRRFCETLTDENRRLHRELQELK-AL 185 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MEVVVNDSCD ADLVLRLGSA MENGINMPGG GRRRRRREDP APYLTLSLSD HQPDGGSPGD 60 TGRQPSPHSA GSSSFSNIKN GAEAASDETE EDGGARKKLR LTKEQSALLE DRFKEHSSLN 120 PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LRRFCETLTD ENRRLHRELQ 180 ELKALKLAPV SMPLYMQLPA AAVTVCPACD RVAAGDNAGK ADDFPATKNV PFLNGYFDSG 240 TC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	37	RRRRRR
2	145	153	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-51	HD-ZIP family protein