PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54236.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 280aa MW: 30857.7 Da PI: 8.561

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ ++++ G+g +W + ++++g++R++k+c++rw++yl PKA54236.1 14 KGPWSPEEDEKLKTYIEKNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.5	6.5e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W++Ia+ ++ gRt++++k++w++ PKA54236.1 69 GGFSEEEDNIICSLYITIGSR-WSLIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDEKLKTYIE KNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYITIGSRW SLIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKDHHHHAR RPSKQENVSG AGAGGIYWPE PALPAYAAAQ TEGGMPVKRL LMKLSGDGGI 180 PPSHAPDHHQ LHHHAYEANA SFTSSSAHGS SFSFSTEFDE MLGCNQAKLE EMDSFFGVTG 240 ASSEFTGLFG APEASPTYPL VAAAATAGYH YSMQQYAFEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-80	MYB family protein