PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54299.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 268aa MW: 29913.2 Da PI: 7.2707

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.9	1.4e-37	87	186	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk r++Ca+dCv+apyfp +q+ kf +v+k+FGasnv k+lk+l++++reda++ lv+eAear++dPv+G+vg ++ lq +l+ l+ el ++ke PKA54299.1 87 PCAACKCRRKRCAEDCVFAPYFPPDQTTKFTVVQKVFGASNVAKILKDLSPDQREDAVTFLVFEAEARLQDPVNGCVGYVQYLQDRLHLLQRELCSAKE 185 7*********************************************************************************************99998 PP DUF260 100 e 100 e PKA54299.1 186 E 186 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MPSPPSSLRL RRICRIASKA TSANHTPPAA PLLSPREVGP QGSNFSLTSA LRRNCEVPRH 60 EHPFLRTRLF RLETLKIIPC ILAMSSPCAA CKCRRKRCAE DCVFAPYFPP DQTTKFTVVQ 120 KVFGASNVAK ILKDLSPDQR EDAVTFLVFE AEARLQDPVN GCVGYVQYLQ DRLHLLQREL 180 CSAKEELFSY TSPAPAAPFA PHQQLPGGFD HGGFDQQPVM PMSGFTGVEM IENNHHHPQH 240 DHDQQQIISD ADQLLATALQ NMESFLLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-33	LBD family protein