PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54306.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 178aa MW: 20028.7 Da PI: 7.067

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.8	1.6e-37	4	103	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+ r+kC++dC +ap+fp +q+ kfa+vh +FGasnv k+l+ l++++re a++slv+eAear++dPv+G+vg ++ l+++l+ l+ el ++k+ PKA54306.1 4 PCAACKHRRQKCTADCLFAPHFPPDQTTKFAIVHNVFGASNVAKILNGLSPDQREVAVTSLVFEAEARLQDPVNGCVGYVMYLRHNLHLLQRELYAAKK 102 7*********************************************************************************************99988 PP DUF260 100 e 100 e PKA54306.1 103 E 103 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MSSPCAACKH RRQKCTADCL FAPHFPPDQT TKFAIVHNVF GASNVAKILN GLSPDQREVA 60 VTSLVFEAEA RLQDPVNGCV GYVMYLRHNL HLLQRELYAA KKELYSYISP PPAATFVPHQ 120 QLTGGADQPA MFSGFTGLEM TENNHHHHQH QHQHQHQQQI LDAEQLATEQ QHMAFLLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-45	LBD family protein