PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA54357.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 354aa    MW: 38729 Da    PI: 7.0576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA54357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10102127127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ f++ GtC+y  +C+FaHg+
  PKA54357.1 102 FKTKLCCKFRA-GTCPYVTNCNFAHGM 127
                 69*********.*************95 PP
2zf-CCCH41.91.7e-13235260126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G +C+FaHg
  PKA54357.1 235 WKTRICNKWEMTGYCPFGTKCHFAHG 260
                 8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MDYGGRSGYA IEIIPDASTA CPEPTIPPLN DHSIWAVEDD YRAWGGETSL DVTPNQANDT  60
RLSQSESQSR AGSEQPQSKK ARGSLLVDSG PNKSKAIGRM FFKTKLCCKF RAGTCPYVTN  120
CNFAHGMEEL RKPPPNWQEI VAAHEEGSPS ESREEHQIPI ITSSDIATDG QRSYKGRHCK  180
KFYTEEGCPY GDMCTFLHDE QSKARESVAI SLSPTVGGGG FGNGVGSSNQ KPSNWKTRIC  240
NKWEMTGYCP FGTKCHFAHG AAELHKYGGK LVEVDARDAL SAASDSRQAG ATTKTTDAAV  300
ASNNLAPHAD VFHVGVPSQR STIVNQRQVQ RPVQKWKGPD RISRIYGDWI DDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-106C3H family protein