PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54537.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 210aa MW: 24536.2 Da PI: 10.465

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	1e-15	20	64	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g W + Ede+l ++v+++G+ +W+ Ia+++ gR++k+c++rw++ PKA54537.1 20 GHWRPGEDEKLRQLVEEFGPQNWNFIAEKLK-GRSGKSCRLRWFNQ 64 67**************************9.*********996 PP
2	Myb_DNA-binding	55.7	1.2e-17	71	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T++E+e+l++a++ +G++ W++Iar ++ gRt++ k++w+ PKA54537.1 71 RRPFTEDEEEKLLEAHRIHGNK-WALIARLFP-GRTDNAMKNHWHV 114 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MLERAAARTK EMAKVRCPQG HWRPGEDEKL RQLVEEFGPQ NWNFIAEKLK GRSGKSCRLR 60 WFNQLNPRIN RRPFTEDEEE KLLEAHRIHG NKWALIARLF PGRTDNAMKN HWHVIMARRR 120 RERAKVIENK GVHQLHHLLN GTSKYLPFYD ILESSCHRSL PPPMRIVVGS LHHVLKGGRP 180 SCGVHDQREE GESLKGKDVE YIDFMGVGRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	2e-64	MYB family protein