PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA54646.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 101aa    MW: 11380.1 Da    PI: 9.4343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA54646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.5e-261058250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                rien   rqvtf+kRr+g+lKKA+ELSvLCda++ +iifs++gklye +
  PKA54646.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGIIIFSTHGKLYELA 58
                8*********************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    
MARGKVQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGIIIFST HGKLYELATN  60
GTMRDLIERY RQSCGETQNV GDSTQPKVST SCFDLFCSSH S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-39MIKC_MADS family protein