PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54690.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 252aa MW: 28364.9 Da PI: 6.2537

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PKA54690.1 25 RGPWTVEEDLVLMNYINSHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 72 89********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PKA54690.1 78 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MKMEVHGRAC SSETAQSEEE MDLRRGPWTV EEDLVLMNYI NSHGEGRWNS LARCAGLRRT 60 GKSCRLRWLN YLRPDVRRGN ITPEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKHAKQL QCDVNSKQFK DVMRYLWMPR LLERIRAAAG NSPTAAPNLA ECGTLAGGDP 180 TVGFGGGAEE DKGGDGIQGD VAMEMAGGGW PEGAPSPGGY AYQGLPELEQ CWGLGGETSE 240 NWWNMEDIWH LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	5e-86	MYB family protein