PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54883.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 442aa MW: 48509.5 Da PI: 8.1107

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29	1.8e-09	60	84	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG C++G +C+F+H+ PKA54883.1 60 GESDCAYYLRTGLCRFGMTCRFNHP 84 7889********************8 PP
2	zf-CCCH	38.4	2e-12	104	128	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ PKA54883.1 104 QPECQYYLKTGTCKFGPTCKFHHPK 128 799********************96 PP
3	zf-CCCH	38.1	2.6e-12	150	174	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG+Ck+G++CkF+H++ PKA54883.1 150 EKECPFYLRTGQCKFGNTCKFHHPQ 174 679********************97 PP
4	zf-CCCH	36.3	9.4e-12	309	335	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f+++tG Ck+G+ CkF+H++ PKA54883.1 309 PGQPECLFYMKTGDCKFGEFCKFHHPR 335 5789*********************96 PP
5	zf-CCCH	38.1	2.5e-12	355	380	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++r+G+Ck+G++CkF H+ PKA54883.1 355 PGEPVCIFYSRYGICKFGPNCKFDHP 380 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MDPAGCGEIQ VHAPGPAASV VTEALATSSF AQPRDEESMW QINSRAGEIM DSGSYPERPG 60 ESDCAYYLRT GLCRFGMTCR FNHPSNRKLA VARMKDGYPE RVGQPECQYY LKTGTCKFGP 120 TCKFHHPKDK AGIEGRVQLN ILGYPLRPNE KECPFYLRTG QCKFGNTCKF HHPQPSSTML 180 SFRGSSVYPS LHSTTPGQQS FTGGLTNWPM SRAASFIASH RWQVPSSYAQ LILPQGLVQV 240 PSWNTFSSQL GSVTSSENQQ LNPMSAHYYG GSHQGETSAG SPGTFSYRSG SVSIGQYALQ 300 RENAFPERPG QPECLFYMKT GDCKFGEFCK FHHPRERIIP SPNCILSPLG LPLRPGEPVC 360 IFYSRYGICK FGPNCKFDHP VTTPMGILAY NLSASSSPDV PVVHRLLGSS SGHHEAGAER 420 SRDLSLSDSR QITSVDSGSE SE

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MDPAGCGEIQ VHAPGPAASV VTEALATSSF AQPRDEESMW QINSRAGEIM DSGSYPERPG  60
ESDCAYYLRT GLCRFGMTCR FNHPSNRKLA VARMKDGYPE RVGQPECQYY LKTGTCKFGP  120
TCKFHHPKDK AGIEGRVQLN ILGYPLRPNE KECPFYLRTG QCKFGNTCKF HHPQPSSTML  180
SFRGSSVYPS LHSTTPGQQS FTGGLTNWPM SRAASFIASH RWQVPSSYAQ LILPQGLVQV  240
PSWNTFSSQL GSVTSSENQQ LNPMSAHYYG GSHQGETSAG SPGTFSYRSG SVSIGQYALQ  300
RENAFPERPG QPECLFYMKT GDCKFGEFCK FHHPRERIIP SPNCILSPLG LPLRPGEPVC  360
IFYSRYGICK FGPNCKFDHP VTTPMGILAY NLSASSSPDV PVVHRLLGSS SGHHEAGAER  420
SRDLSLSDSR QITSVDSGSE SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-152	C3H family protein