PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54999.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 211aa MW: 22473 Da PI: 10.6355

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00096	155	175	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ Cg Fs+ +L H+r PKA54999.1 155 HECSVCGSKFSSEQTLGGHMR 175 78*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MESQEEALGS NSCSGDSPYP SFTRRKRTVR QRAAPLPPAA AAAATSSLAS SAEDSGITDQ 60 KDIGTTSSSS PKAATFPRTN SAAPPRGDSL VGGSPSAKPA SSASPPSRPS AATEQATRSP 120 KHRPWYWRLS ATYKLEPPPP ATLAGKDGAG TAKIHECSVC GSKFSSEQTL GGHMRERERE 180 ILRKDRKFQK NSVPVRLSYS QITQKKARIF D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	188	LRKDRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-07	C2H2 family protein