PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55047.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 582aa MW: 61756.7 Da PI: 9.0274

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PKA55047.1 89 FICEVCNKGFQREQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	13.1	0.00028	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PKA55047.1 165 WKCEKCSKRYAVQSDWKAHSKTC 187 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MAEASSSSPF FSIDSTTTEE HLNQLKSLQH HQQQQQPSSL ASSSTSTVVA ANSQGAAPPK 60 KKRNLPGNPN PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK 120 STKEVRRRVY LCPEPTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARLPNGLSTI GSHLYGGSSC 240 IGLGLSQVNS VQLSSLQQQT HSPADLLRLG AGAGGSVAAG APFDQLVVSA ANPPTFRPSS 300 AFLFGGSATQ GFGEDTHQTH QSYLQSKPFH GLMQLPDLQQ NPNTSSAAAA AAANFFHLGF 360 FPGAGGSTGS MNQSSNADNQ NSHLMMHDQF SGVNAGGDQP AVNLFAGNVM TNHMGGGIPS 420 ILNSSAQNSS VLPQMSATAL LQKAAQMGAA TSNNSGARGG GGAAVISGFG SSMSLKPANM 480 VDQGQSDQNH LQDIMNSFAN GSSAMFNIDE ARYQHQLSTV GGFGGSDGLT RDFLGVGSMM 540 RGIARGVSQM EQHQGFDLGP IDPEMQSAAA SSSRSFAAGS QR

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MAEASSSSPF FSIDSTTTEE HLNQLKSLQH HQQQQQPSSL ASSSTSTVVA ANSQGAAPPK  60
KKRNLPGNPN PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK  120
STKEVRRRVY LCPEPTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARLPNGLSTI GSHLYGGSSC  240
IGLGLSQVNS VQLSSLQQQT HSPADLLRLG AGAGGSVAAG APFDQLVVSA ANPPTFRPSS  300
AFLFGGSATQ GFGEDTHQTH QSYLQSKPFH GLMQLPDLQQ NPNTSSAAAA AAANFFHLGF  360
FPGAGGSTGS MNQSSNADNQ NSHLMMHDQF SGVNAGGDQP AVNLFAGNVM TNHMGGGIPS  420
ILNSSAQNSS VLPQMSATAL LQKAAQMGAA TSNNSGARGG GGAAVISGFG SSMSLKPANM  480
VDQGQSDQNH LQDIMNSFAN GSSAMFNIDE ARYQHQLSTV GGFGGSDGLT RDFLGVGSMM  540
RGIARGVSQM EQHQGFDLGP IDPEMQSAAA SSSRSFAAGS QR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-125	C2H2 family protein