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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PKA55114.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 287aa MW: 31753.4 Da PI: 4.5655 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 64.9 | 1.1e-20 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ Fe ++++ e++ eLAkklgL+ rqV vWFqNrRa++k
PKA55114.1 68 KKRRLTPEQVHLLETSFEAENKLEPERKSELAKKLGLQPRQVAVWFQNRRARWK 121
5678*************************************************9 PP
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| 2 | HD-ZIP_I/II | 130.4 | 7e-42 | 67 | 157 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqv+lLE+sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++dal ++++L +++++Lr+++
PKA55114.1 67 EKKRRLTPEQVHLLETSFEAENKLEPERKSELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDRLKANLDALLGDHDALLRDNDRLRSQV 157
69**************************************************************************************998 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 287 aa Download sequence |
MDSGRFIFDS SFPHGGHMLV LGGTGSPVFR GARSVLSLEE GPNKRRPFFT TAEELLEEEY 60 YDEQLPEKKR RLTPEQVHLL ETSFEAENKL EPERKSELAK KLGLQPRQVA VWFQNRRARW 120 KTKQLERDYD RLKANLDALL GDHDALLRDN DRLRSQVLSL TERLREKELA EAGKLPISDP 180 KEEAAFEGQL SPPPPPLPTP PQPRWEDRLS TGSGESVVVD GGGPALPLDS SGDSYFQIQG 240 GAGCCMGPLD GGVASEEDGG SSDDGCSYLP GSMFVEAADA GNWWVWS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 116 | 124 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 1e-56 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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