PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55480.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 205aa    MW: 22090.7 Da    PI: 10.64
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-142168254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +r+h+e+Er+RR+riN  +++Lr+llP a     ++++Ka+ L ++v+++++L
  PKA55480.1 21 CRSHSEAERKRRQRINGHLATLRSLLPAA-----TRMDKATLLAEVVRHVREL 68
                789**************************.....9***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
METDGNVVPV ASSSSPAGRS CRSHSEAERK RRQRINGHLA TLRSLLPAAT RMDKATLLAE  60
VVRHVRELRR RADDVAFTSL PSEGDEVGFE EDEDSRAGGV GGGERVKAWV CCADRPGLMA  120
ELNRAVGSSR ARAVRAEVTT IGGRTRSVLE LELPGGPAPV GVEARSAIQA ALRAVVLEDR  180
SGSADRFKRQ RLSNRFSTAT FNNNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-14bHLH family protein