PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55517.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 204aa    MW: 23098.2 Da    PI: 8.503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1970125156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k+ +++keq + Lee F++n++++ +++e LA+klgL  rqV vWFqNrRa+ k
  PKA55517.1  70 RQKKLRLSKEQSRLLEESFRQNHTLNPKQKEALAAKLGLRARQVEVWFQNRRARTK 125
                 5678899***********************************************98 PP
2HD-ZIP_I/II1222.9e-3971159189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rlskeq++lLEesF+++++L+p++K++la +Lgl++rqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+
   PKA55517.1  71 QKKLRLSKEQSRLLEESFRQNHTLNPKQKEALAAKLGLRARQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRA 159
                  69*************************************************************************************94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MADLQLTMAM PGWSSPSSSG IDLFHFEEGG GCNVSLKDLD MNRPAREAEE EFQAGSAEEV  60
EEDDGDGGHR QKKLRLSKEQ SRLLEESFRQ NHTLNPKQKE ALAAKLGLRA RQVEVWFQNR  120
RARTKLKQTE MECEYLKRCF GSLTEENRRL QREVEELRAM RVAPPTVISP VTRRPIAASA  180
LTMCPRCQRF TTAAPPRRPP SAAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-63HD-ZIP family protein