PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55538.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 352aa MW: 38140.8 Da PI: 6.6541

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	3.8e-41	87	163	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dl +++yhrrhkvCe+hsk+pvv+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ PKA55538.1 87 CLVDGCKSDLRGCRDYHRRHKVCEIHSKTPVVIVGGQEQRFCQQCSRFHLLMEFDEVKRSCRKRLDGHNRRRRKPQP 163 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MDWDSKMPPW DLPELEQTAG GLNSSSGGDG LGCSVDLKLG RFGDFGLPEN WKGETRATAS 60 SSMLPPVASG SLKRPRGPVN SGQSASCLVD GCKSDLRGCR DYHRRHKVCE IHSKTPVVIV 120 GGQEQRFCQQ CSRFHLLMEF DEVKRSCRKR LDGHNRRRRK PQPESANMGT LFQNHQDPAW 180 SSIVKTEEDP AIYSHHQSPM RFVGMPAQAP LQFAGTFHCS FKEGKQLPFL EADGCCQPLA 240 TTISSASVSS SSSKMMFSDC ALSLLSSSSQ IPMGQPLLQS FAYGGCSRSP ANPRGINSPT 300 VFASSRAEDE ILGAALVPDA GEGDDLHCQS VFQVGDEGLS DEGPPSPPFS WQ

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MDWDSKMPPW DLPELEQTAG GLNSSSGGDG LGCSVDLKLG RFGDFGLPEN WKGETRATAS  60
SSMLPPVASG SLKRPRGPVN SGQSASCLVD GCKSDLRGCR DYHRRHKVCE IHSKTPVVIV  120
GGQEQRFCQQ CSRFHLLMEF DEVKRSCRKR LDGHNRRRRK PQPESANMGT LFQNHQDPAW  180
SSIVKTEEDP AIYSHHQSPM RFVGMPAQAP LQFAGTFHCS FKEGKQLPFL EADGCCQPLA  240
TTISSASVSS SSSKMMFSDC ALSLLSSSSQ IPMGQPLLQS FAYGGCSRSP ANPRGINSPT  300
VFASSRAEDE ILGAALVPDA GEGDDLHCQS VFQVGDEGLS DEGPPSPPFS WQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	161	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-46	SBP family protein