PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55556.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 300aa MW: 32400.8 Da PI: 6.5729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.7e-05	122	141	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ PKA55556.1 122 FSCAVCNKTFNRFNNMQMHM 141 89*****************9 PP
2	zf-C2H2	12.9	0.00034	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F + + ++H +++ PKA55556.1 210 FACRRCGKAFAVRGDWRTHEKNC 232 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MKSGNPPLAF MADQEADEEE EEDENSILLL TLWPPGQQNN PSPSSASSSS AGSSSHWLRG 60 SSSFRQPDDE SNVTVALSIG PPNAGGCGGG SSSAAGGGFG SSAPTQYWIP SAAEILVGAT 120 QFSCAVCNKT FNRFNNMQMH MWGHGSQYRK GPESLRAATA KVTPAAMMRL PCYCCAEGCK 180 NNIGHPRARP LKDFRTLQTH YKRKHGARPF ACRRCGKAFA VRGDWRTHEK NCGKLWFCIC 240 GSDFKHKRSL KDHVRSFGGG HAPHMVESLG GGDEGEEEEE EEDAEEGDES SVIARAGERD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-103	C2H2 family protein