PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55560.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

RAV

Protein Properties

Length: 356aa MW: 38042.8 Da PI: 9.575

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.9	3.2e-10	60	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f + +Aa a++ a+ +++g PKA55560.1 60 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLERDAAGAYDVAAHRFRG 108 78**9888.8*****3.....5******99**********998 PP
2	B3	99	2.9e-31	183	283	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae+h gg++ e +++ed g++W+++++y+ +s++yvltkGW++Fvk++gLk+gD v F++++ s+++l++ PKA55560.1 183 FDKAVTPSDVGKLNRLVIPKQHAEKHfplaaGGVPGE--LVSFEDGGGKVWRFRYSYWSSSQSYVLTKGWSRFVKEKGLKAGDAVGFYRSKGSDRQLYI 279 89**************************9999866..7**********************************************99889998988 PP EEE- CS B3 95 kvfr 98 ++ PKA55560.1 280 ECRK 283 8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MDSTSTNDSS STSDVAAAPA TLQPPPPLQR MGSGASAVID PSPLAEPDVE AESSRKLPSS 60 RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN LERDAAGAYD VAAHRFRGRD AATNFPPLFS 120 AGDGDEAATH ELGFILSRSK AEVVDMLRKH TYSDELQQWL RRSPAAAAAT SGADQKAARE 180 HLFDKAVTPS DVGKLNRLVI PKQHAEKHFP LAAGGVPGEL VSFEDGGGKV WRFRYSYWSS 240 SQSYVLTKGW SRFVKEKGLK AGDAVGFYRS KGSDRQLYIE CRKGTTAGCG GGGFLPLAAV 300 DPVKVVRLFG VDLVKAAVEG SALNDNGKRR TEGTEAAAPA AGVGWLKKQC IVALAG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MDSTSTNDSS STSDVAAAPA TLQPPPPLQR MGSGASAVID PSPLAEPDVE AESSRKLPSS  60
RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN LERDAAGAYD VAAHRFRGRD AATNFPPLFS  120
AGDGDEAATH ELGFILSRSK AEVVDMLRKH TYSDELQQWL RRSPAAAAAT SGADQKAARE  180
HLFDKAVTPS DVGKLNRLVI PKQHAEKHFP LAAGGVPGEL VSFEDGGGKV WRFRYSYWSS  240
SQSYVLTKGW SRFVKEKGLK AGDAVGFYRS KGSDRQLYIE CRKGTTAGCG GGGFLPLAAV  300
DPVKVVRLFG VDLVKAAVEG SALNDNGKRR TEGTEAAAPA AGVGWLKKQC IVALAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-107	RAV family protein