PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55613.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 120aa MW: 13944.5 Da PI: 9.1668

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00062	35	58	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ + H H PKA55613.1 35 FKCHVCHKKLSTAGGMAIHVLQvH 58 89***********99999987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence
MGKKKKRPSK VWCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTAGGM AIHVLQVHKE 60 NVTKYRSDCP PNLCLFPVRL ALNLCLISGC VVEMVPFCLS TRIPSAYTER FEGLYLLQRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	33	KKKKRPSKVWCYYCDREFDDEKILVQHQKAK
2	4	34	KKKKRPSKVWCYYCDREFDDEKILVQHQKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	7e-40	C2H2 family protein