PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55621.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family Nin-like
Protein Properties Length: 433aa    MW: 47639.8 Da    PI: 7.9063
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.43.2e-24259305349
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
                  ++++edl++yF+lpi++AA+eL +c T+LK+iCR++G++RWPhRk+
  PKA55621.1 259 GKLHIEDLANYFHLPIAEAARELRICSTALKKICRRHGMARWPHRKV 305
                 68999*****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MDDFCCSPAP LPTSAGDEDD DVLRYLEFFD PDYTQPPLIP PPPSPPPPDP VSSAGHLSVD  60
DPMQDPSFWD FSCHHPSPAA EPPAPGCSSH VSPETGAATE CRSPPTDSVL LREVVHSNGL  120
KVMRLRIHGG IGKFSHATLD INHNIDSFPP TIEQYCIDLS SQSFEWVKQF ILDYGLLRLR  180
DEYVMTEDSI AAFFDALCAG MSYGAGRLPS PPPETGGYHY FMHNTMKWLN GHSRSATVNG  240
TGSCRVLKTG IAAQRERTGK LHIEDLANYF HLPIAEAARE LRICSTALKK ICRRHGMARW  300
PHRKVYPSLS SKIDTDGRGV GGSHATRKAV AGNPHLREGR PRPSAGRMPR VRPHPASLAR  360
GVRPADIVAV SRSQGSTGER ERGGERRIRS IDRRISVLLR DLCNEDTQEA KNAQAEIDRL  420
RAQRARICAG LPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.18e-12Nin-like family protein