PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55688.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GATA
Protein Properties Length: 362aa    MW: 38006.8 Da    PI: 6.8385
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17265298134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +Cg  kTp+WR gp g+ktLCnaCG++y++ +
  PKA55688.1 265 CMHCGIQKTPQWRAGPMGPKTLCNACGVRYKSGR 298
                 99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MATRGHMEVP ATSMFCDDPF DSIDDLLDFS NDDDALATAE ACDASAPLIL PPAPAMISVA  60
GGCSGVTSGG AGIDAKPDAF GMCNDVDICN LEWLSGFFSD SEFNFEQNIG SAAGDIKEDP  120
LFRTSSPVSV LEPNTLSGAA AAAAAAEAGA ASSSPASSCS SSSSSFSSTI CDGTGSNING  180
ESQVAALIIP ARARTKRARP RPSACSFILP PVDRRGSNDE SFSQPIKKQK KKKKKKKKKK  240
AATADTDEDE NLTVAAAAPL AARKCMHCGI QKTPQWRAGP MGPKTLCNAC GVRYKSGRLF  300
PEYRPAASPT FVSTVHSNSH KKVVEMRLKA CQLAEANGES PQPEATAAAK NCDLLEYIRR  360
RD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227235KKQKKKKKK
2230236KKKKKKK
3230240KKKKKKKKKKK
4230238KKQKKKKKK
5231237KKKKKKK
6231241KKKKKKKKKKK
7231239KKQKKKKKK
8232238KKKKKKK
9232240KKQKKKKKK
10233239KKKKKKK
11234240KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-37GATA family protein