PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55702.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 375aa MW: 40647.5 Da PI: 6.2797

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	8e-38	55	151	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++rr+C++dC+lapyfpa+q+ +f nvh+lFG+++++k+l+++ +++r++am+s++y+++ara+ Pv G++ +il+l++q++ + +el+ + PKA55702.1 55 ACASCKYQRRRCSPDCILAPYFPADQETQFHNVHRLFGVKKIQKILESVAPDRRPEAMRSIIYQSNARAQYPVGGCYHIILDLHRQIQAVFSELQFV 151 7***************************************************************************************999998866 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSSSTPDLPN LPSSPALRSP QRHYPGSEHS CSLPTNNTPR PSPSSSFTSS SSSSACASCK 60 YQRRRCSPDC ILAPYFPADQ ETQFHNVHRL FGVKKIQKIL ESVAPDRRPE AMRSIIYQSN 120 ARAQYPVGGC YHIILDLHRQ IQAVFSELQF VLRQVAVCQA QVEAAASAVA AAGVQPNNLL 180 LNTVAGDVLP LPLGEHQQQY LNYVYCDGMG EPESGNGDGN GYDSNDGIAG FDISANAAGS 240 EGFEMPPAML GLRQQVEGED EDVKPIVDTF GGHGFPVGKD EGNSRDAAAA ASCVITLQCG 300 VYVVNWLFCS SSIELKEDQT LLEQMQEHDL KRVSRHRSTF VFDGQFGAGR HIRAGAKEVI 360 STAPGKRECR RLCSP

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSSSTPDLPN LPSSPALRSP QRHYPGSEHS CSLPTNNTPR PSPSSSFTSS SSSSACASCK  60
YQRRRCSPDC ILAPYFPADQ ETQFHNVHRL FGVKKIQKIL ESVAPDRRPE AMRSIIYQSN  120
ARAQYPVGGC YHIILDLHRQ IQAVFSELQF VLRQVAVCQA QVEAAASAVA AAGVQPNNLL  180
LNTVAGDVLP LPLGEHQQQY LNYVYCDGMG EPESGNGDGN GYDSNDGIAG FDISANAAGS  240
EGFEMPPAML GLRQQVEGED EDVKPIVDTF GGHGFPVGKD EGNSRDAAAA ASCVITLQCG  300
VYVVNWLFCS SSIELKEDQT LLEQMQEHDL KRVSRHRSTF VFDGQFGAGR HIRAGAKEVI  360
STAPGKRECR RLCSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-29	LBD family protein