PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55720.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 887aa    MW: 96172.5 Da    PI: 7.5787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19133188156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF++n++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  PKA55720.1 133 KKRYHRHTARQIQEMEALFKENQHPDDKHRLRLSQDLGLKPRQVKFWFQNRRTQMK 188
                 688899***********************************************998 PP
2START136.33.4e-4344061146206
                 EEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE- CS
       START  46 ealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvds 132
                 e  r+s++v+m++ +l+  ++d++ +W e ++    ka +++vissg      g l lm+ae+q+lsplvp R+ +f+Ry+ +  ++g+++ivd  +d+
  PKA55720.1 440 EGTRDSTLVIMNSITLLDAFMDSN-KWVELFPsiisKARMIQVISSGlsghgsGSLLLMYAEFQVLSPLVPtREAYFLRYCLRnVEEGTCTIVDFPIDN 537
                 5679********************.**********************************************************99************** PP

                 TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 133 eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                   +   + ++   +++pSg+li++++ng+s+v+wveh++++++ +h+++++lv+sg+a+ga+ w++ lqrqce+
  PKA55720.1 538 LLQDGIQMPLTSYRRRPSGCLIQDMPNGYSRVIWVEHAEVEDKPVHQIFNQLVNSGMAFGASCWLSNLQRQCER 611
                 988877888888888*********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    
MYGDCQVLPA AVVSAGAGGG NAVSSDSIFS SAIRSPNLSP FAGFMNSFHS ALQVRGRAAL  60
FCFPFFLLSG MKLKVSAFVG LQKKESTPAA GTRKEEEMES GSGSGEENDD GTPPPPTASE  120
AATAPQNPPP GKKKRYHRHT ARQIQEMEAL FKENQHPDDK HRLRLSQDLG LKPRQVKFWF  180
QNRRTQMKVR TCASCFLHVE GFALCVPRPL ISPVVCGGPQ AQQDRADNVL LRAENDNLKN  240
ENYRLQAAIR NVVCPNCGGP AMIGELSFDE HHLRVENARL KEELDRLSCI AGRYSGRLMP  300
PPPPLGMSPA LMLPAAVDLE MGVYPRQFPG TPPFPQLPGI GDCGEILLSA AGLAHGDHLA  360
GVLVPEPKKR LALELAMTAA DQLATLCRMN EPLWQPISGV AGAGACGGQV EFLDKAEHGR  420
LLPWPVDLQP LGGAGEFITE GTRDSTLVIM NSITLLDAFM DSNKWVELFP SIISKARMIQ  480
VISSGLSGHG SGSLLLMYAE FQVLSPLVPT REAYFLRYCL RNVEEGTCTI VDFPIDNLLQ  540
DGIQMPLTSY RRRPSGCLIQ DMPNGYSRVI WVEHAEVEDK PVHQIFNQLV NSGMAFGASC  600
WLSNLQRQCE RLASMMARNI SDLGVIPTPE ARKNMMKLSQ RMVKTFCSNI TSSGGLSWTA  660
LSDSPDDTIR VTTRKNTLPG QPNGVILSAV STTWLPFSYH QVFDLLTDEN RRSQLDSLSS  720
GNSLHEVAHI ANGSHPRNCV SLLRIKTRMK MRQQCCQYAL LMASRALEPK LAVSLSFTHS  780
SGGSLIVYAT VAVDAIQVAI SGEDSSYIPL LPTGFVLFPS TSSCSPATGE LRAPTGCLLT  840
VGMQVLASAV PSAKLNLSSI TAINHHLCTA VHQITAALAG QLPENLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein