PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55789.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

DBB

Protein Properties

Length: 239aa MW: 25949.4 Da PI: 4.8615

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.8e-06	5	46	6	41
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ + C ++ lC C +e H H++ p PKA55789.1 5 CDVCGAAAAAVICCADEAALCSRCDEEVHAAnklagkHRRLP 46 ****99*******************6678888998877 PP
2	zf-B_box	30.1	1e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k + +fC +++ l+C+dC +++H H PKA55789.1 53 KLPRCDICQDKAAFIFCVEDRALFCQDCDEAIHIAgtlsgnH 94 5789*****************************224555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MRIGCDVCGA AAAAVICCAD EAALCSRCDE EVHAANKLAG KHRRLPLDCG AAKLPRCDIC 60 QDKAAFIFCV EDRALFCQDC DEAIHIAGTL SGNHQRLLAT GIRVGLVPVQ NNDLEKHHPE 120 PPNGNSMVQA PKIPAKSQLA PSTSSAAAWA VEDFLQLSDY ESNEKQESSV GFGELSWFTD 180 VGFSPSSERS FAAAEVPEML FSRPGNLSFY RSNKSILPFK KPRIEMLNDE DFFTVPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	7e-70	DBB family protein