PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55890.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 255aa MW: 28659.8 Da PI: 7.893

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G g+W++++r+ g+ R++k+c++rw +yl PKA55890.1 14 RGLWSPEEDEKLVKHITTYGHGCWSSVPRRAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.5	1.2e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l+++++k G++ W+ Ia++++ gRt++++k++w++ PKA55890.1 67 RGSFSPQEENLIIELHKVIGNR-WAQIAKHLP-GRTDNEVKNYWNS 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGHHSCCNKQ KVRRGLWSPE EDEKLVKHIT TYGHGCWSSV PRRAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEENLIIE LHKVIGNRWA QIAKHLPGRT DNEVKNYWNS TIKKKLIAQA 120 VEGLKRAEIS NPMPCNAPQE LLPLTAFHLQ SYSYSKPEAS AETRILQLSS SHGSIWPLEN 180 PFQPMNGDLS IFSDGNDHLI NGPECIVPLM GNGPCCSGLT ECMEVLSRPS SMAEVIACDD 240 VIDNNNPFFL PHMLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	8e-76	MYB family protein