PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55894.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB_related
Protein Properties Length: 275aa    MW: 30580.1 Da    PI: 10.072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v ++G g W+tI +         +R+  ++k++w++ 
       PKA55894.1  5 KQKWTSEEEEALRAGVDKHGAGKWRTIQKDPEfshclATRSNIDLKDKWRNM 56
                     79************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGAPKQKWTS EEEEALRAGV DKHGAGKWRT IQKDPEFSHC LATRSNIDLK DKWRNMIVSA  60
GGPSSREKIR TPKLKSVPTV QSSSQSPPVQ APVKVEAQKS AVDSKDPQDA KIPTRYNAII  120
MEALTVLQEP NGAEIGAICR YIEQRMEVPS GFRRFLGSRL RRLVTQNKIE KEQRGYRLKD  180
ASFATKTPTP KQKEPSNRLR PQQASVLPKP VDPVDEVATA AAYKIADAEA KAFLASEAVK  240
ELEKISRMAE ETDSLLMLAK EIFERCVRGE VVTVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-49MYB_related family protein