PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55895.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 275aa MW: 29924.2 Da PI: 5.634

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.6e-07	204	246	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rrRR+r+ +++ L++l+P K++ a++L +A +Y+k L PKA55895.1 204 AAARRRRERVSERLRVLQRLVPGG-----SKMDTAAMLDEAANYLKFL 246 567*****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MQYELISGED HQDMLINEVL LSASLHDQLQ QESEAVIHDE QQEAMSNFLH GFDSDRAGFS 60 HNFSVSAESE ELPLQSLQIC SSYSAAVDSE SHRGYSNINP SKAAAAPKRK REDHSGGFQI 120 TFGGGGGGDP SKPKKTRTNS LGSSSSIEFG RESSYEPDAE AIAQVKEMIY RAAAMRPVSF 180 AAEEAAPEKP KRKNVRISDD PQTAAARRRR ERVSERLRVL QRLVPGGSKM DTAAMLDEAA 240 NYLKFLKAQV GVLEGINGGD HSCGLLPFSV TFSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	134	KRKREDHSGGFQITFGGGGGGDPSKPK
2	191	210	KRKNVRISDDPQTAAARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	8e-29	bHLH family protein