PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56017.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 245aa MW: 27972.9 Da PI: 8.3484

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W++ ++ g+ R++k+c++rw +yl PKA56017.1 14 KGAWTKEEDERLVAYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.6	5.8e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ PKA56017.1 67 RGNITDEEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 7999****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDERLVAYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNI TDEEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLVSRG 120 IDPATHRPLH ERHAAIKTVP FAVGEEEDKN QSSGEEPEKE EEEKEKKKTK KWRCPDLNLD 180 LCISPPFQKA FEEDEISTVK EGLALSLCFS CRLGVKSSSE CKYCGGGFLG QRTGVLDYRS 240 LETNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	9e-94	MYB family protein